Creating a GST challan is one of the first steps in paying your GST liability. Whether you’re making a regular tax payment, depositing tax under the QRMP Scheme, or paying interest or penalties, the process begins with generating the right challan on the GST portal. Entering incorrect details or choosing the wrong tax head can lead to payment mismatches and additional corrections later. This guide explains what a GST challan is, when you need one, the different types available, and how to create, pay, and track it correctly.  

What is a GST Challan? 

A GST challan is a payment document generated on the GST portal when a taxpayer needs to deposit tax, interest, penalty, or any other amount payable under GST. It captures the payment details, including the GSTIN, tax period, tax heads, and the amount to be paid. When a challan is generated, the GST portal assigns it a unique 14-digit Common Portal Identification Number (CPIN). The CPIN identifies the challan before payment is completed and remains valid for 15 days from the date of generation. 

Once the payment is successfully processed by the bank, the CPIN is converted into a 17-digit Challan Identification Number (CIN) by adding a three-digit bank code. The CIN serves as proof of a successful GST payment and can be used to track the transaction on the GST portal. If payment is not completed within the 15-day validity period, the challan expires automatically, and a new one must be generated. You can also save a challan and access it from the Saved Challan tab for up to seven days before completing the payment. 

Importance of GST Challan  

A GST challan captures three key details: the GSTIN, the tax period, and the tax head under which the payment is made, such as IGST, CGST, SGST, or cess. If any of these details are entered incorrectly, the payment may not be applied to the correct tax liability. As a result, the original liability remains unpaid, and interest at 18% per annum continues to apply until the error is corrected as per the statutory provisions. If the payment has been made under the wrong tax head, Form GST PMT-09 can be used to transfer the amount between heads within the Electronic Cash Ledger. 

The amount paid through the GST challan is added to your Electronic Cash Ledger, which is used to pay the tax liability declared in GST returns. When the ledger is updated correctly, monthly or quarterly returns can be filed using the available balance. Consistent GST payments and regular return filing can also support an MSME’s financial profile, as lenders may consider both while assessing applications for working capital or collateral-free loans. 

 

When Do You Need a GST Challan?  

The type of GST challan you need depends on your filing scheme. Selecting the correct challan before making the payment helps ensure the amount is recorded against the intended return.  

  • Regular Scheme Challan: Used by monthly filers to pay the tax liability declared in the GSTR-3B return for the relevant tax period.  
  • QRMP Scheme Challan (Form PMT-06): Used by businesses under the Quarterly Return Monthly Payment (QRMP) Scheme to deposit tax for the first two months of each quarter. Payment can be made using either the 35% fixed sum method, where the portal pre-populates 35% of the previous quarter’s cash liability, or the self-assessment method, based on the actual tax liability for that month. The remaining tax for the quarter is paid while filing GSTR-3B in the third month.  
  • Composition Scheme Challan (Form CMP-08): Used by composition taxpayers to deposit tax based on their quarterly turnover at the prescribed composition rates.  
  • Nil Filing: If there are no sales, purchases, or tax liability during a tax period, a Nil GSTR-3B or CMP-08 can be filed without generating a GST challan, as no payment is required.  

How to Pay GST Challan Online

Before generating a GST challan, confirm that the GSTIN, tax period, tax head, and payment amount are correct. These details determine how the payment is recorded in the Electronic Cash Ledger, and any error can result in payment being credited under the wrong head or GSTIN. Once these details have been verified, choose the appropriate payment mode and proceed with challan generation.  

Step 1: Accessing the GST Payment Portal 

The process begins at the official GST portal, gst.gov.in. After logging in with valid credentials, navigate to Services > Payments > Create Challan. Logging in links the payment to the business’s Electronic Cash Ledger and provides access to previously saved challans and payment history. A challan may also be generated without logging in by entering the GSTIN on the Create Challan page, though tracking the payment later requires the CPIN and GSTIN to be entered manually rather than retrieved through the dashboard.  

Step 2: Choosing the Right Challan 

At this stage, the tax head, the distribution between CGST, SGST, IGST, and cess, together with the correct tax period, require careful entry, as the portal does not automatically identify an incorrectly selected period. Any challan saved before completion remains available under the Saved Challan tab for seven days, allowing the payment process to be resumed without creating a new challan. Businesses maintaining registrations across multiple states should also verify that the GSTIN displayed matches the intended registration before proceeding.  

Step 3: Making the Payment 

Once the amount, tax heads, and tax period have been confirmed, select a payment mode. The portal provides three options: e-payment through net banking or UPI, over-the-counter payment at an authorised bank branch (up to ₹10,000 per challan), and NEFT or RTGS for larger amounts. After a payment mode is selected, the portal generates the challan with its CPIN and redirects the transaction to the chosen payment channel.  

E-Payment of GST 

E-payment through net banking or UPI remains the preferred option for most small businesses, as the amount is reflected in the Electronic Cash Ledger shortly after the payment is processed. UPI transactions are subject to daily limits set by individual banks, typically between ₹1 lakh and ₹2 lakh. Payments above this limit are better made through net banking or RTGS. Once net banking or UPI is selected, the portal redirects the taxpayer to the bank’s payment gateway, where the transaction is completed before returning to the GST portal. 

For NEFT or RTGS payments, the GST portal generates a mandate form along with the challan, containing the beneficiary bank account and IFSC details required to initiate the transfer. After the transfer is completed, the amount is reflected in the Electronic Cash Ledger, usually within about two hours. The bank-issued Unique Transaction Number (UTR) is then used to link the payment to the corresponding CPIN on the GST portal. 

Tracking Your GST Challan Payment Status  

After a successful payment, you can verify the status of your GST challan through Challan History on the GST portal. For e-payments, the portal displays a receipt containing the CIN, along with the payment date, amount, and tax head. For NEFT or RTGS transactions, the UTR received by email or SMS must first be linked to the CPIN under Challan History, after which the payment status is updated and the amount is reflected in the Electronic Cash Ledger. 

The amount can then be used to pay the tax liability declared in the corresponding GSTR-3B, PMT-06, or CMP-08 return.  

Common Issues and Solutions 

Payment Failure 

A GST payment does not always appear on the portal immediately after the amount is debited from the bank account. In most cases, the payment is reflected within twenty-four hours. If the Electronic Cash Ledger still shows no update after this period, use the Enquiry Status option under the Payments tab to trace the transaction. Where the issue remains unresolved, raise a ticket on the GST Self-Service Portal using the CPIN and bank reference number. If the same challan is debited twice, the excess amount is refunded automatically after the bank completes the reconciliation process, which may take a few working days.  

Incorrect Challan Selection 

Selecting the wrong tax head, entering the wrong tax period, or making a payment against an incorrect GSTIN does not result in the loss of funds. If the payment has been made under the wrong tax head, Form GST PMT-09 allows the amount to be transferred between heads within the same Electronic Cash Ledger, without requiring a fresh deposit. However, a payment made against the wrong GSTIN can be corrected through PMT-09 only if both GSTINs are registered under the same PAN (and limited to IGST/CGST heads). If the wrong GSTIN belongs to a different PAN, PMT-09 cannot be used — the taxpayer must file a refund via RFD-01 and generate a fresh challan under the correct GSTIN. 

Conclusion 

A GST challan is created in a matter of minutes, but the details entered at that stage determine how the payment is recorded throughout the GST process. Verifying the GSTIN, tax period, and tax head before proceeding takes far less time than correcting a payment later. A careful review before clicking Pay can make the entire payment process far smoother.  

Frequently Asked Questions 

Is there a fee to generate a GST challan?  

No fee applies to generating a challan on the GST portal. Any charge would depend on the bank’s own transaction policy for NEFT or RTGS transfers. 

Can a GST challan be edited after generation?  

No. Where details are incorrect, the appropriate course is to allow the challan to expire after fifteen days and generate a fresh one with the correct entries. 

What happens if a CPIN expires before payment?  

The challan becomes invalid, and a new one must be generated before the payment can be made. There is no penalty if a challan expires without being used, but interest on the outstanding GST liability continues until the payment is completed.  

Can GST be paid without logging into the portal?  

Yes, through direct entry of the GSTIN on the Create Challan page, though logging in keeps the payment linked correctly to the business dashboard and its saved history. 

Is UPI a reliable option for GST payment?  

Yes, for amounts within the bank’s daily UPI limit. Payments above this threshold are better completed through net banking or RTGS. 

What if an incorrect GSTIN is entered on a challan?  

This cannot be corrected through PMT-09. A refund application must be filed for the wrongly paid amount, followed by a fresh challan raised against the correct GSTIN.